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Files

The Files tab contains a list all files available in this workspace - either uploaded by the user or the ones that are marked as default and are publicly available. The Files tab also allows users to upload new files. There are two types of files that can be uploaded:

Inference sets

  • CSV files with two required columns:
    • peptide_seq - sequence of 8-20 amino acids
    • CDR3b - sequence of 8-20 amino acids
  • Used for running predictions after uploading

Training sets

  • CSV files with three required columns:
    • peptide_seq - sequence of 8-20 amino acids
    • CDR3b - sequence of 8-20 amino acids
    • y - either 1 or 0 indicating bind or not bind
  • Used for training the model after uploading

All uploaded files go through an automatic verification process before they can be used in Inference or Training.